Showing posts with label Microbiology. Show all posts
Showing posts with label Microbiology. Show all posts

A Bacterium That Acts Like a Toothbrush

Researchers have identified a new ally in the war against tooth decay: an enzyme produced by a mouth bacterium that prevents plaque formation. The finding could eventually lead to the development of toothpaste that harnesses the body's own plaque-fighting tools.

The human mouth is awash with bacteria. More than 700 species thrive in the hot, moist conditions, including Streptococcus mutans, one of the main components of plaque. Clinging to the teeth in thin layers called biofilms, S. mutans digests sugars and produces acids that can eat into enamel and cause cavities. Other bacteria are more gracious guests. In 2009, for example, scientists found that S. salivarius, a type of bacterium found on the tongue and other soft tissues in the mouth, decreases the buildup of S. mutans biofilms.

Hidenobu Senpuku, a biologist at the National Institute of Infectious Diseases in Tokyo, and colleagues wanted to know what substance conferred S. salivarius's cavity-fighting powers. Using chromatography, a method that divides the molecules in a mixture based on charge or size, they separated out individual proteins from samples of the microbe. The scientists then mixed each kind of protein with S. mutans cells and measured which cultures grew the smallest amount of biofilm on plates in the lab. The protein FruA, an enzyme that breaks apart complex sugars, was the most powerful biofilm blocker.

The researchers also found that a form of FruA, produced by the common fungus Aspergillus niger and available off-the-shelf, stymies plaque equally well. This commercial FruA worked despite the fact that its amino acid sequence is somewhat different from that of S. salivarius FruA. That might speed the development of toothpastes that include FruA, says Senpuku.

The findings, reported in Applied and Environmental Microbiology, are not a license to eat all the candy you want, however. When researchers increased the concentration of sucrose, a type of sugar, in mixtures containing S. salivarius FruA and S. mutans, the beneficial bacterium lost its ability to prevent biofilm formation. The authors write that this observation may help explain why a 1996 study found that FruA contributed to cavity formation in rats.

Mary Ellen Davey, a microbiologist at the Forsyth Institute in Cambridge, Massachusetts, agrees that the findings could spur the development of better toothpaste. But she says that won't be an easy task. Finding "the formulation that would 'guarantee' that the enzyme remained enzymatically active on the shelf of your favorite drug store is a big challenge," she says.

Chemical composition of eukaryotic chromosome

The eukayotic chromosome is composed of DNA, basic proteins called histones, non-histone proteins(involved in transcription, replication, repair and recombination of DNA) and RNA . The histone proteins are basic proteins rich in arginine and lysine. They are of 5 types-H1, H2A, H2B, H3 and H4.
Eight molecules two each of H2A, H2B, H3 and H4. From an ellipsoid core (11nm long and 6.5-7nm in diameter) around which about 147-166bp of DNA coils in 13/4 turns. This DNA histone complex is called nucleosome, the building block of chromosome, the building block of chromosome found as repeating units. The nucleosomes appear as a string of beads in the chromatin. About 14-100bp of DNA between these beads forms the LINKER region.
The hsitone H1 associates with the linker to aid folding of DNA into a more complex chromatin (in the form of 10nm zigzag or 30nm solenoild fibire). DNA enters and exits the nucleosome at sites close to each other and two turns of turns of DNA are stabilized and “sealed off” by H1, during cell division there is maximum folding of the chromatin and hence visible as chromosomes.

Polythene chromosomes:

In certain tissues of insects belonging to the order dipteral (flies, mosquitoes). The cell nuclei have reached a high degree of enlargement accompanied by many extra replications of each new chromosome within a single nucleus (endopolyploidy), however instead of each new chromosome separating as an individual unit all replicates of the same chromosome are lined up together in parallel fashion. This parallel duplication or polyteny, results in very think chromosomes that magnify any differences in density along their length (eg chromosomes). The numbers of bands varies between different species but are constant for the member of any particular sp.
In polyteny the two homologous chromosomes of each diploid pair are also often lined up side by side (somatic pairing) so that if the total diploid number of chromosomes id eight (4 pairs). Only four very thick and long chromosomes appear. The same chromomere in many paired chromatids may expand to form “puffs”. Polytene chromosomes were alilized in genetic research first by painter in 1933.

Lampbrush Chromosomes

The oocytes of some vertebrates with large yolky eggs expand greatly during their growth period, forming correspondingly large nuclei at these stages. In some aphibia the meiotic prophase chromosomes of such nuclei can reach about 1000 μm in length with long lateral loops giving a hairy “lampbrush”. Each pair of loops arise from single chromosomes located at short intervals along the very thin and double stranded chromosome. Towards the end of meiotic prophase the loops begin to disappear and the chromosomes contract, so that the metaphase bivalents are of the usual small size.

Chromosome of Cyanobacteria

The DNA in cyanobacteria is organized into a complex helical and folded structure and is distributed uniformly throughout the cytoplasm. It is likely that DNA is associated with histone like proteins and RNA. The size of the genome varies widely in cyanobacteria with molecular weight ranging between 1.6x109 and 8x109 daltons. Most of the unicellular cyanobacteria possess genomes of about 1.6x109 – 2.7x109 daltons. Filamentous cyano bacteria how ever have larger genomes.
Viral Genome
The core of the virion is made up of nucleic acid, either DNA or RNA never both. Four types of nucleic acid are formed in viruses with reference to number of strands. They formed in viruses with reference to number of strands.
They are:
1- Single stranded DNA ( ssDNA) Eg.Ø X 174
2- Double stranded DNA (dcDNA) Eg. Herpes virus
3- Single Stranded RNA (ssRNA) eg. TMV
4- Double stranded RNA (dsRNA) eg. Reovirus
The ssDNA may be linear (Parvovirus) or circular (Ø X 174). The ssDNA becomes double-stranded during replication when it is called replicative form (RF).
Double stranded DNA (dsDNA) is found in many animal viruses and bacteriophages. It maybe linear (in bacteriophages), cross-linked (Vaccinia virus) or closed circular duplex (Papova virus)
Single- stranded RNA (ssRNA) found in a variety of animal viruses and plant viruses maybe plus (infectious) RNA as in RNA bacteriophage, togaviruses etc or minus (non- infectious) as in rhabdoviruses and paramyxoviruses. Plus ssRNA directly acts as mRNA and is translated to proteins on host ribosomes where as minus ssRNA first transcribe in mRNA through an RNA/DNA intermediate and then gets translated to proteins.
Double- stranded RNA is found in animal viruses like reovirus.
In general, plant viruses have RNA (ss/ds) as genetic material except for canlimovirus and geminivirus which contain DNA. Animal viruses have DNA (ds) and RNA (ss/ds). Bacteriophages have DNA (ss/ds) or RNA (ss/ds). Most phages are DNA viruses.

CHROMOSOME

The term chromosome was introduced by waldeyer in 1888. The identification of chromosomes as vehicles of hereditary was put forth by Sutton, boven and others in 1903 - chromosome theory of hereditary. The chromosomes are seen as microscopic thread-like structures in the nucleus of eukaryotes and in the nucleotide region of prokaryotes.

Prokaryotic chromosome

Prokaryotic cell contains neither a distinct membrane around nucleus nor a mitotic apparatus. The Prokaryotic chromosome, almost always a single circle of double stranded DNA is located in an irregularly shaped region called the nucleoid (also called the nuclear body, chromatin body, nuclear region). The nucleoid can be observed under the electron microscope and also under the light microscope after staining with the Feulgen stain, which specifically reacts with DNA. A cell can have more than one nucleoid when cell division occurs after DNA replication. Some bacteria like Agrobacterium tumefaciens are found to have more than 4 chromosomes.

Sinorhizobium meliloti is found to have 3 chromosomes. But usually, most prokaryotes are haploid with only a single chromosome.

In actively growing bacteria, the nucleoid has projections that extend into the cytoplasmic matrix. These may contain DNA that is being actively transcribed to produce mRNA.

Electron microscopic studies have shown the nucleoid in contact with either the mesosome or the plasma membrane which maybe involved in separation of DNA into daughter cells during division. Chemical analysis of nucleoids reveals that they are composed of about 60% DNA, some RNA and a small amount of protein.

In E.coli, a rod shaped bacterium of about 2-6 m length and 0.5- 1.5 m diameter, the closed DNA circle measures approximately 1400 m representing 4x106 bp. Therefore it needs to be efficiently packaged to fit within the nucleoid. The DNA is looped and coiled extensively (about 45 supercoiled loops) probably with the aid of nucleoid proteins which differ from the histone like protein (Hu) have been found to be associated with isolated DNA. Perhaps these proteins act as repressors and prevent some sections of the chromosome from being transcribed.

Recently electron microscope observations have shown the presence of nucleosome-like structure in the E.coli chromosome. DNA is found to constitute 80% by weight of the chromosome and in addition proteins (10% largely RNA polymerase enzyme) and RNA (30% newly transcribed mRNA, tRNA, rRNA) core is present which acts as a scaffold and holds the loops and determines their position. The chromosome appears to be a highly regular. Then negative charge of the DNA neutralized by polyamines such as spermine and spermidine and by Mg2+ as well as basic proteins. A dense region containing membranous material is seen in the central part and is likely to represent fragments of plasma membrane,(mesosomes), to which the chromosomes is attached in the intact cell. The DNA has in addition to the four usual bases small amounts of methylated bases such as 6-methylaminopurine and 5-methylcytosine.

In archaeobecteria like Thermoplasma acidophilus, DNA is found condensed by wrapping around a proteinaceous core, quite unusual for a prokaryote. It contains a single, small, basic histone-like protein (termed HTa) that forms nucleosome like structure containing a core of four molecules of HTa around which a 40 base pair length DNA is wrapped.

Paramecium

The paramecium is larger than the amoeba. It can be found in ponds with scum on them. It has more of a shape than an amoeba, looking like the bottom of a shoe. It is covered with tiny hairs that help it move. These hairs are called cilia. The paramecium is able to move in all directions with its cilia.


The paramecium eats tiny algae, plants, etc. The cilia propel the food into a tiny mouth opening of the paramecium. The food is then shoved down a little tube called a gullet that leads to the protoplasm or stuffing of the cell. The food is held in little cells called vacuoles. It has two other vacuoles at either end of its body to get rid of excess water and wastes. As with the amoeba, oxygen and carbon dioxide pass through the cell membrane of the paramecium.


The paramecium has two nuclei, a big and small one. The big one operates as the director of the cell's activities, rather like a little brain. The smaller one is used for reproduction. The paramecium splits in half (fission) just as the ameba does. First the smaller nucleus splits in half and each half goes to either end of the paramecium. Then the bigger nucleus splits and the whole paramecium splits. Occasionally two paramecium exchange material and form a new paramecium. This is called conjugation.

Economic importance of genus Aspergillus.

Aspergillus has both harmful ans useful activities from the view of the human.

Harmful activities

Many species of Aspergillus such as A. glqaus A.flavus A. repns are responsible
of spoilage of exposed food stuff like jams, jellies, bread, tobacco and
many other product like leather & textiles. Many of the species are pathogenic to animals as well as human beigns. A. flavus,

A. fumigates and A.niger causes diseases of respiratory tracks commonly refered to as
aspergilloses. Aspergilloses is reported in birds, cattle, sheep, horses and human begins.

Symptoms of Aspergillosis resembles those of tuberculosis. Diesease of the human ear called otomycosis is caused by A.niger, A.flavus and A.fumigatus.

A.flavus produces a toxic substance called afflotoxin which has some carcinogenic effects and may cause cancer of liver in human begin and animals.


Conidia of Aspergillus are abundant in air. They usually spoil the laboratory culture. Many plant diseases-crown rot of ground nut and ball rot of cotton are caused by
species of Aspergillus.


Aspergillus nidulaus


A. niger

Useful effects

Several species are employed in cheese manufacturing.

A.oryzae is used in the preparation of wine from rice and soya bean sauces. Some specises of aspergillus are the source of certain antibiotics like Flavicein,Aspergillin, Geodin, Funagalin, Patulin, Ustin etc.

A. niger is used in bio-assay of metals as it can detect copper even in traces.

A.gowssipii is used in the production of vitamin B. Some species are used in the production of fats. Several species are used in the industrial production of organic acids like citric acid and gluconic acid.

Saccharomyces

Class: Acromycetes

Order: Endomycetales

Family: Saccharomycetaeceae

Genus: Saccharomyces

Saccharomyces is saprophytic fungi (Yeast) found growing abundantly in sugary substance such as fruits, syrups, jams, nectar, honey, toddy etc. it is uni-cellular but sometimes the cell may remain attached giving the appearance of a pseudo mycelium. the cells are small oval or spherical in shape and grow as white or creamy colonies on the surface of solid nutrient media.


Each cell has a definite two layered cell wall made up of fungal cellulose with the chitin. The cell wall encloses the protoplasm which can be differentiated into outer ectoplasm and the inner endoplasm. The cell contains a large centroplasm consists of a single large nucleus, sub-cellular organelles like endoplasmic reticulum, ribosome, mitochondria, and reserved food material in the form of glycogen, volutin granules and oil globules.

REPRODUCTION

Saccharomyces reproduce by budding or fusion or by sexual reproduction.

BUDDING


It is the most common type of reproduction in which the parent cell gives rise to a small bud- like out growth. The nucleus of the parent cell divides in to two and one daughter nucleus along with cytoplasm enters the bud. The bud grows in size and may get a pinched-off from the mother cell or may remain attached to it intern forming bud, there by giving rise to pseudo mycelium.

SEXUAL REPRODUCTION
It is of isogamous type where two vegetative cells behave as gemates and put out small protuberances, which meats and forms conjugation tubes. The nuclei of the two gametes fuse along with cytoplasm and form a zygote which develops in to ascus. The diploid nucleus of the ascus under goes mitosis to form 4-8 ascospores which when release develop into new yeast cell.

Aspergillus

Class: Acromycetes

Order: Aspergillales

Family: Aspregillaceae

Genus: Aspergillus

Aspergillus is a wide spread fungus generally saprophytic and growing stale bread , fruits, vegetables, jams, jellies, foot wear etc. a few species of Aspergillus are parasitic causing lung disease (aspergillosis) and ear infection (outomycosis).


The mycelium consists of a hyaline branched, septate and multi nucleated hyphae. Most of the mycelium grows above the substratum. Some hyphae grow deep into the substratum and halt in the distribution of nutrient and encouraged.

REPRODUCTION

ASEXUAL REPRODUCTION

Asexual reproduction

From the vegetative mycelium many un-branched erect, fertile hyphae called conidiophores arise from thick-walled cells called foot cells. These conidiophores form a swollen dawn shaped vesicles at the tips. The vesicles produce bottle shaped structure called sterigmata, which produces chains of conidia at their tips in basipital sub sessions. The sterigmata are multi nucleated and maybe found in two layers in some spices. The asexual spore called conidia are small , unicellular ,spherical structure with a double layer wall. The outer layer is called epispore/ exime, which is spiny and inner layer called the endospores/ intine. The conidial wall is pigmented with shapes of black, blue, green, yellow etc. depending upon the species. The conidia germinate by the production of germ tube and develop into new hyphae. The conidia are light weighted and carried by a wind.

SEXUAL REPRODUCTION


Sexual reproduction

It is by means of gametengial contact between the male antheridium and female ascogonium, which maybe produced on the same or different hyphae. Fertilization results in the formation of fruiting body called ascocarps, cleistothecium , which encloses a number of asci, each containing 8 ascospores, which when liberated germinates to give rise to a new mycelium.

ECONOMIC IMPORTANCE

A.niger also called the black mold is used in the industrial production of citric acid and glycolic acid.

A.flavus is known to produce a mycotoxin called aflatoxin.

Many species are important in food spoilage and some are known to cause disease.

Penicillium

Class: Acromycetes

Order: Aspergillales

Family: Aspregillaceae

Genus: Penicillium

Penicillium is commonly called blue mold. It is a saprophytic found growing in decaying fruits and vegetables, especially citrus fruits-like orange and lemon. The mycelium consists of pale hyaline brightly hyphae which generally grow superficially on the substratum, the hyphae are septate branched and uni- nucleated.

REPRODUCTION

ASEXUAL REPRODUCTION

It is for the formation of conidia on special branch called conidiopores. The conidiophores is the long, slender septate grows right from the vegetative hyphae . They maybe branched or unbranched. The ultimate branches of the cornidiophore are called matulate. The metulate produce bottle shaped cells called sterigmata or phialides. The conidia are born in chains of basipital successions at the tip of each stigma. The terminal part of the cornidiophore has a brush or broom-like appearance knows as penicillus hence the name penicillium. The conidia are blue green, olive green or grey depending upon the species. They are globose in shape, uni-nucleate and has a smooth wall. They germinate and give rise to a new mycelium

SEXUAL REPRODUCTION

It is by means of gametangial contact between the male antheridium and female ascogonium which maybe produced on the same or different hyphae. Fertilization results in the formation of fruiting bodies called ascocarps, cleisthothecium which encloses the number of asci. Each containing 8 ascospores which when liberated germinates to give rise to a new mycelium.

ECONOMIC IMPORTANCE


The genus penicillium is of great ecomomic importance .concidering the dis advantage of fungus first. It causes great demage of furniture .fabrics etc. .The profuse growth growth of mycelium on the windows ,furniture etc, forms a blue coating .oe of the greatest demages iscaused to the fruits and vegetables for example. P.digitatum and P.expansum cause the decay of sitrus fruits . the latter spices are causing the decay of apples. Some of the spices are causing animat and human diease. For example. Pencillosis of lungs. However these can be controlled by careful hanling og material. Keeping them under restricted air supply , low temperature and dry condition

Rhizopus

Class: Zygomycetes

Order: Mucorales

Family: Mucoraceae

Genus: Rhizopus

Rhizopus is commonly called bread molds. It is a saprophytic fungus found growing on bread, jam, pickles, decaying vegetables and fruits etc. the plant body consists of white cottony mycelium growing over the substratum. The young mycelium consists of long aseptate coenocytic hyphae. The older mycelium has three types of hyphae

1. Stolons : they are staut cylindrical creeping hyphae . They are differentiated in to nodes and inter nodes.

2. Rhizoidal hyphae: it produces at the node of the stolon .they are highly branched and penetrated into substratum .they provide courage and absorb food.

3. Sporangiopore: they are Arial staut hyphae which arise from substratum from the time of asexual reproduction. They develop from the node in clusters. Initially the hyphae have the cell wall made up of fugal cellulose. It encloses the cytoplasm. Hyphae are asepetate coenocytic, small vacuoles, oil droplets and glycogens are distributed in the cytoplasm.

ASEXUAL REPRODUCTION


It is by the formation of spore. The sporangiopore are short staut and arise at the node of stolon in clusters. A single sporangium is developed at the apex of each sporangiopore. Each sporangium is spherical in shape with the columella in the centre. The space between the columella and the sporangial wall is filled with uni- nuclei, non-motile aplanospore. The spores are liberated by breaking of the sporangial wall they germinate to form new mycelium.

SEXUAL REPRODUCTION

It is isogamous bind gematangial copulation. The sex organs develop when two mating strands + and - comes close to each other. The two gametangia on the opposite strands are formed as protruebalance. The nuclei moves to the tip and separated from the remaining pro-gametangia by a septum. The remaining part forms the suspensor. The wall of the gametangia meets, dissole and the nuclei fuses to form coenozygospore , which develops a thick wall and form a zygospore . On germination it produces a pro-mycelium and a terminal sporangium.

Pythium

Class: Oomycetes

Order: Peronosporales

Family: Pythiaceae

Genus: Pythium

Pythium is a mold of cosmopolitan distribution and consisting of about 45 species which maybe aquatic or terrestrial inhabits. It is facultative parasite on fresh water algae and seedling of many plants like mustard, papaya, tobacco, beans, ginger, etc. it also occurs saprophytic ally in moist soil. Pythium infects the host plant by the wounds. It is also responsible for the “damping- off” disease of seedling. It is also causes “soft rot”,”root rot” etc. it is also involved in decay and decomposition of the plant remains in the soil.

The mycelium of Pythium appears as a white fluffy growth consisting of slender, branched, aseptatic coenocytic hyphae without rhizoids. In the host plant mycelium is both inter and intra cellular without hysteria formation. The cell wall is made up of fungal cellulose and the cytoplasm consists of , many nuclei and other membrane bound organelles like, the mitochondria, ribosome’s, endoplasmic reticulum etc. Reserved food materials are in the form of oil droplets and glycogen.

REPRODUCTION
Reproduction in Pythium is both asexual and sexual.

ASEXUAL REPRODUCTION
It is by the formation of biflagellate zoospore inside zoosporangia both at the tip of the sporangiopore. The sporangium is globule with an epical papilla. Some spices have filamentous or elongated sporangia, which are the same diameter of the hyphae and are they form indistinguishable from hyphae. The sporangiopore maybe simple or in branched. In some spices the sporangia germinates directly into new hyphae and hence they are called cornidium.

SEXUAL REPRODUCTION
It is oogamous and occurs in the formation of terminal oval or spherical oogonium and an elongated antheridium from adjacently on the same mycelium. Fertilization of the female gamete in the oogonium is by the male single functional nucleus in the antheridium which results in the formation of thick walled oospores.

ECONOMIC IMPORTANCE
Pythium dibaryanun causes the “damping-off” tobacco and chilies seedlings.
P. aphanidermatum causes soft rot of apple, papaya and beans.
P.myriotylum causes rhizome rot of ginger.
Pythium is also responsible for decomposition of organic matter in the soil

 
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